The Process and Purpose of Gene Expression Regulation
Gene expression is a highly complex, regulated process that begins with DNA transcribed into RNA, which is then translated into protein.
Discuss how the genome and proteome contribute to the specialization of a cell
- Every cell within an organism shares the same genome (with exceptions, i.e. mature red blood cells), but has variation between its proteomes.
- Gene expression involves the process of transcribing DNA into RNA and then translating RNA into proteins.
- Gene expression is a highly complex and tightly-regulated process.
- somatic: part of, or relating to the body of an organism
- genome: the cell’s complete genetic information packaged as a double-stranded DNA molecule
- proteome: the complete set of proteins encoded by a particular genome
Each somatic cell in the body generally contains the same DNA. A few exceptions include red blood cells, which contain no DNA in their mature state, and some immune system cells that rearrange their DNA while producing antibodies. In general, however, the genes that determine whether you have green eyes, brown hair, and how fast you metabolize food are the same in the cells in your eyes and your liver, even though these organs function quite differently. If each cell has the same DNA, how is it that cells or organs are different? Why do cells in the eye differ so dramatically from cells in the liver ?
Whereas each cell shares the same genome and DNA sequence, each cell does not turn on, or express, the same set of genes. Each cell type needs a different set of proteins to perform its function. Therefore, only a small subset of proteins is expressed in a cell that constitutes its proteome. For the proteins to be expressed, the DNA must be transcribed into RNA and the RNA must be translated into protein. In a given cell type, not all genes encoded in the DNA are transcribed into RNA or translated into protein because specific cells in our body have specific functions. Specialized proteins that make up the eye (iris, lens, and cornea) are only expressed in the eye, whereas the specialized proteins in the heart (pacemaker cells, heart muscle, and valves) are only expressed in the heart. At any given time, only a subset of all of the genes encoded by our DNA are expressed and translated into proteins. The expression of specific genes is a highly-regulated process with many levels and stages of control. This complexity ensures the proper expression in the proper cell at the proper time.
In this section, you will learn about the various methods of gene regulation and the mechanisms used to control gene expression, such as: epigenetic, transcriptional, post-transcriptional, translational, and post-translational controls in eukaryotic gene expression, and transcriptional control in prokaryotic gene expression.
Prokaryotic versus Eukaryotic Gene Expression
Prokaryotes regulate gene expression by controlling the amount of transcription, whereas eukaryotic control is much more complex.
Compare and contrast prokaryotic and eukaryotic gene expression
- Prokaryotic gene expression is primarily controlled at the level of transcription.
- Eukaryotic gene expression is controlled at the levels of epigenetics, transcription, post-transcription, translation, and post-translation.
- Prokaryotic gene expression (both transcription and translation) occurs within the cytoplasm of a cell due to the lack of a defined nucleus; thus, the DNA is freely located within the cytoplasm.
- Eukaryotic gene expression occurs in both the nucleus (transcription) and cytoplasm (translation).
- epigenetics: the study of heritable changes caused by the activation and deactivation of genes without any change in DNA sequence
- nucleosome: any of the subunits that repeat in chromatin; a coil of DNA surrounding a histone core
Prokaryotic versus Eukaryotic Gene Expression
To understand how gene expression is regulated, we must first understand how a gene codes for a functional protein in a cell. The process occurs in both prokaryotic and eukaryotic cells, just in slightly different manners.
Prokaryotic organisms are single-celled organisms that lack a defined nucleus; therefore, their DNA floats freely within the cell cytoplasm. To synthesize a protein, the processes of transcription (DNA to RNA) and translation (RNA to protein) occur almost simultaneously. When the resulting protein is no longer needed, transcription stops. Thus, the regulation of transcription is the primary method to control what type of protein and how much of each protein is expressed in a prokaryotic cell. All of the subsequent steps occur automatically. When more protein is required, more transcription occurs. Therefore, in prokaryotic cells, the control of gene expression is mostly at the transcriptional level.
Eukaryotic cells, in contrast, have intracellular organelles that add to their complexity. In eukaryotic cells, the DNA is contained inside the cell’s nucleus where it is transcribed into RNA. The newly-synthesized RNA is then transported out of the nucleus into the cytoplasm where ribosomes translate the RNA into protein. The processes of transcription and translation are physically separated by the nuclear membrane; transcription occurs only within the nucleus, and translation occurs only outside the nucleus within the cytoplasm. The regulation of gene expression can occur at all stages of the process. Regulation may occur when the DNA is uncoiled and loosened from nucleosomes to bind transcription factors (epigenetics), when the RNA is transcribed (transcriptional level), when the RNA is processed and exported to the cytoplasm after it is transcribed (post-transcriptional level), when the RNA is translated into protein (translational level), or after the protein has been made (post-translational level).