Molecular Structure and Polarity

Learning Objectives

By the end of this section, you will be able to:

• Predict the structures of small molecules using valence shell electron pair repulsion (VSEPR) theory
• Explain the concepts of polar covalent bonds and molecular polarity
• Assess the polarity of a molecule based on its bonding and structure

Thus far, we have used two-dimensional Lewis structures to represent molecules. However, molecular structure is actually three-dimensional, and it is important to be able to describe molecular bonds in terms of their distances, angles, and relative arrangements in space (Figure 1). A bond angle is the angle between any two bonds that include a common atom, usually measured in degrees. A bond distance (or bond length) is the distance between the nuclei of two bonded atoms along the straight line joining the nuclei. Bond distances are measured in Ångstroms (1 Å = 10–10 m) or picometers (1 pm = 10–12 m, 100 pm = 1 Å).

Figure 1. Bond distances (lengths) and angles are shown for the formaldehyde molecule, H2CO.

VSEPR Theory

Valence shell electron-pair repulsion theory (VSEPR theory) enables us to predict the molecular structure, including approximate bond angles around a central atom, of a molecule from an examination of the number of bonds and lone electron pairs in its Lewis structure. The VSEPR model assumes that electron pairs in the valence shell of a central atom will adopt an arrangement that minimizes repulsions between these electron pairs by maximizing the distance between them. The electrons in the valence shell of a central atom form either bonding pairs of electrons, located primarily between bonded atoms, or lone pairs. The electrostatic repulsion of these electrons is reduced when the various regions of high electron density assume positions as far from each other as possible.

VSEPR theory predicts the arrangement of electron pairs around each central atom and, usually, the correct arrangement of atoms in a molecule. We should understand, however, that the theory only considers electron-pair repulsions. Other interactions, such as nuclear-nuclear repulsions and nuclear-electron attractions, are also involved in the final arrangement that atoms adopt in a particular molecular structure.

Figure 2. The BeF2 molecule adopts a linear structure in which the two bonds are as far apart as possible, on opposite sides of the Be atom.

As a simple example of VSEPR theory, let us predict the structure of a gaseous BeF2 molecule. The Lewis structure of BeF2 (Figure 2) shows only two electron pairs around the central beryllium atom. With two bonds and no lone pairs of electrons on the central atom, the bonds are as far apart as possible, and the electrostatic repulsion between these regions of high electron density is reduced to a minimum when they are on opposite sides of the central atom. The bond angle is 180° (Figure 2).Figure 3 illustrates this and other electron-pair geometries that minimize the repulsions among regions of high electron density (bonds and/or lone pairs). Two regions of electron density around a central atom in a molecule form a linear geometry; three regions form a trigonal planar geometry; four regions form a tetrahedral geometry; five regions form a trigonal bipyramidal geometry; and six regions form an octahedral geometry.

Figure 3. The basic electron-pair geometries predicted by VSEPR theory maximize the space around any region of electron density (bonds or lone pairs).

Electron-Pair Geometry versus Molecular Structure

It is important to note that electron-pair geometry around a central atom is not the same thing as its molecular structure. The electron-pair geometries shown in Figure 3 describe all regions where electrons are located, bonds as well as lone pairs. Molecular structure describes the location of the atoms, not the electrons.

Figure 4. The molecular structure of the methane molecule, CH4, is shown with a tetrahedral arrangement of the hydrogen atoms.

We differentiate between these two situations by naming the geometry that includes all electron pairs the electron-pair geometry. The structure that includes only the placement of the atoms in the molecule is called the molecular structure. The electron-pair geometries will be the same as the molecular structures when there are no lone electron pairs around the central atom, but they will be different when there are lone pairs present on the central atom.

VSEPR structures like the one in Figure 4 are often drawn using the wedge and dash notation, in which solid lines represent bonds in the plane of the page, solid wedges represent bonds coming up out of the plane, and dashed lines represent bonds going down into the plane. For example, the methane molecule, CH4, which is the major component of natural gas, has four bonding pairs of electrons around the central carbon atom; the electron-pair geometry is tetrahedral, as is the molecular structure (Figure 4). On the other hand, the ammonia molecule, NH3, also has four electron pairs associated with the nitrogen atom, and thus has a tetrahedral electron-pair geometry. One of these regions, however, is a lone pair, which is not included in the molecular structure, and this lone pair influences the shape of the molecule (Figure 5).

Figure 5. (a) The electron-pair geometry for the ammonia molecule is tetrahedral with one lone pair and three single bonds. (b) The trigonal pyramidal molecular structure is determined from the electron-pair geometry. (c) The actual bond angles deviate slightly from the idealized angles, because the lone pair takes up a larger region of space than do the single bonds, causing the HNH angle to be slightly smaller than 109.5°.

As seen in Figure 5, small distortions from the ideal angles in Figure 6 can result from differences in repulsion between various regions of electron density. VSEPR theory predicts these distortions by establishing an order of repulsions and an order of the amount of space occupied by different kinds of electron pairs. The order of electron-pair repulsions from greatest to least repulsion is:

lone pair-lone pair > lone pair-bonding pair > bonding pair-bonding pair

This order of repulsions determines the amount of space occupied by different regions of electrons. A lone pair of electrons occupies a larger region of space than the electrons in a triple bond; in turn, electrons in a triple bond occupy more space than those in a double bond, and so on. The order of sizes from largest to smallest is:

lone pair > triple bond > double bond>single bond

Consider formaldehyde, H2CO, which is used as a preservative for biological and anatomical specimens (Figure 1). This molecule has regions of high electron density that consist of two single bonds and one double bond. The basic geometry is trigonal planar with 120° bond angles, but we see that the double bond causes slightly larger angles (121°), and the angle between the single bonds is slightly smaller (118°).

In the ammonia molecule, the three hydrogen atoms attached to the central nitrogen are not arranged in a flat, trigonal planar molecular structure, but rather in a three-dimensional trigonal pyramid (Figure 5) with the nitrogen atom at the apex and the three hydrogen atoms forming the base. The ideal bond angles in a trigonal pyramid are based on the tetrahedral electron pair geometry. Again, there are slight deviations from the ideal because lone pairs occupy larger regions of space than do bonding electrons. The H–N–H bond angles in NH3 are slightly smaller than the 109.5° angle in a regular tetrahedron (Figure 3) because the lone pair-bonding pair repulsion is greater than the bonding pair-bonding pair repulsion (Figure 5). Figure 6 illustrates the ideal molecular structures, which are predicted based on the electron-pair geometries for various combinations of lone pairs and bonding pairs.

Figure 6. The molecular structures are identical to the electron-pair geometries when there are no lone pairs present (first column). For a particular number of electron pairs (row), the molecular structures for one or more lone pairs are determined based on modifications of the corresponding electron-pair geometry.

According to VSEPR theory, the terminal atom locations (Xs in Figure 6) are equivalent within the linear, trigonal planar, and tetrahedral electron-pair geometries (the first three rows of the table). It does not matter which X is replaced with a lone pair, because the molecules can be rotated to convert positions. For trigonal bipyramidal electron-pair geometries, however, there are two distinct X positions, as shown in Figure 7: an axial position (if we hold a model of a trigonal bipyramid by the two axial positions, we have an axis around which we can rotate the model) and an equatorial position (three positions form an equator around the middle of the molecule). As shown in Figure 6, the axial position is surrounded by bond angles of 90°, whereas the equatorial position has more space available because of the 120° bond angles. In a trigonal bipyramidal electron-pair geometry, lone pairs always occupy equatorial positions because these more spacious positions can more easily accommodate the larger lone pairs.

Theoretically, we can come up with three possible arrangements for the three bonds and two lone pairs for the ClF3 molecule (Figure 7). The stable structure is the one that puts the lone pairs in equatorial locations, giving a T-shaped molecular structure.

Figure 7. (a) In a trigonal bipyramid, the two axial positions are located directly across from one another, whereas the three equatorial positions are located in a triangular arrangement. (b–d) The two lone pairs (red lines) in ClF3 have several possible arrangements, but the T-shaped molecular structure (b) is the one actually observed, consistent with the larger lone pairs both occupying equatorial positions.

When a central atom has two lone electron pairs and four bonding regions, we have an octahedral electron-pair geometry. The two lone pairs are on opposite sides of the octahedron (180° apart), giving a square planar molecular structure that minimizes lone pair-lone pair repulsions (Figure 6).

Predicting Electron Pair Geometry and Molecular Structure

The following procedure uses VSEPR theory to determine the electron pair geometries and the molecular structures:

1. Write the Lewis structure of the molecule or polyatomic ion.
2. Count the number of regions of electron density (lone pairs and bonds) around the central atom. A single, double, or triple bond counts as one region of electron density.
3. Identify the electron-pair geometry based on the number of regions of electron density: linear, trigonal planar, tetrahedral, trigonal bipyramidal, or octahedral (Figure 6, first column).
4. Use the number of lone pairs to determine the molecular structure (Figure 6). If more than one arrangement of lone pairs and chemical bonds is possible, choose the one that will minimize repulsions, remembering that lone pairs occupy more space than multiple bonds, which occupy more space than single bonds. In trigonal bipyramidal arrangements, repulsion is minimized when every lone pair is in an equatorial position. In an octahedral arrangement with two lone pairs, repulsion is minimized when the lone pairs are on opposite sides of the central atom.

The following examples illustrate the use of VSEPR theory to predict the molecular structure of molecules or ions that have no lone pairs of electrons. In this case, the molecular structure is identical to the electron pair geometry.

Example 1: Predicting Electron-pair Geometry and Molecular Structure: CO2 and BCl3

Predict the electron-pair geometry and molecular structure for each of the following:

1. carbon dioxide, CO2, a molecule produced by the combustion of fossil fuels
2. boron trichloride, BCl3, an important industrial chemical

Carbonate, ${\text{CO}}_{3}^{2-}$, is a common polyatomic ion found in various materials from eggshells to antacids. What are the electron-pair geometry and molecular structure of this polyatomic ion?

Example 2: Predicting Electron-pair Geometry and Molecular Structure: Ammonium

Two of the top 50 chemicals produced in the United States, ammonium nitrate and ammonium sulfate, both used as fertilizers, contain the ammonium ion. Predict the electron-pair geometry and molecular structure of the ${\text{NH}}_{4}^{+}$ cation.

Identify a molecule with trigonal bipyramidal molecular structure.

The next several examples illustrate the effect of lone pairs of electrons on molecular structure.

Example 3: Predicting Electron-pair Geometry and Molecular Structure: Lone Pairs on the Central Atom

Predict the electron-pair geometry and molecular structure of a water molecule.

The hydronium ion, H3O+, forms when acids are dissolved in water. Predict the electron-pair geometry and molecular structure of this cation.

Example 4: Predicting Electron-pair Geometry and Molecular Structure: SF4

Sulfur tetrafluoride, SF4, is extremely valuable for the preparation of fluorine-containing compounds used as herbicides (i.e., SF4 is used as a fluorinating agent). Predict the electron-pair geometry and molecular structure of a SF4 molecule.

Predict the electron pair geometry and molecular structure for molecules of XeF2.

Example 5: Predicting Electron-pair Geometry and Molecular Structure: XeF4

Of all the noble gases, xenon is the most reactive, frequently reacting with elements such as oxygen and fluorine. Predict the electron-pair geometry and molecular structure of the XeF4 molecule.

In a certain molecule, the central atom has three lone pairs and two bonds. What will the electron pair geometry and molecular structure be?

Molecular Structure for Multicenter Molecules

When a molecule or polyatomic ion has only one central atom, the molecular structure completely describes the shape of the molecule. Larger molecules do not have a single central atom, but are connected by a chain of interior atoms that each possess a “local” geometry. The way these local structures are oriented with respect to each other also influences the molecular shape, but such considerations are largely beyond the scope of this introductory discussion. For our purposes, we will only focus on determining the local structures.

Example 6: Predicting Structure in Multicenter Molecules

The Lewis structure for the simplest amino acid, glycine, H2NCH2CO2H, is shown below. Predict the local geometry for the nitrogen atom, the two carbon atoms, and the oxygen atom with a hydrogen atom attached:

Another amino acid is alanine, which has the Lewis structure shown below. Predict the electron-pair geometry and local structure of the nitrogen atom, the three carbon atoms, and the oxygen atom with hydrogen attached:

Example 7: Molecular Simulation

Using molecular shape simulator allows us to control whether bond angles and/or lone pairs are displayed by checking or unchecking the boxes under “Options” on the right. We can also use the “Name” checkboxes at bottom-left to display or hide the electron pair geometry (called “electron geometry” in the simulator) and/or molecular structure (called “molecular shape” in the simulator).

Build the molecule HCN in the simulator based on the following Lewis structure:

$\text{H-C}\equiv \text{N}$

Click on each bond type or lone pair at right to add that group to the central atom. Once you have the complete molecule, rotate it to examine the predicted molecular structure. What molecular structure is this?

Build a more complex molecule in the simulator. Identify the electron-group geometry, molecular structure, and bond angles. Then try to find a chemical formula that would match the structure you have drawn.

Molecular Polarity and Dipole Moment

As discussed previously, polar covalent bonds connect two atoms with differing electronegativities, leaving one atom with a partial positive charge (Δ+) and the other atom with a partial negative charge (Δ–), as the electrons are pulled toward the more electronegative atom. This separation of charge gives rise to a bond dipole moment. The magnitude of a bond dipole moment is represented by the Greek letter mu (µ) and is given by the formula shown below, where Q is the magnitude of the partial charges (determined by the electronegativity difference) and r is the distance between the charges:

$\mu =\text{Qr}$

This bond moment can be represented as a vector, a quantity having both direction and magnitude (Figure 13). Dipole vectors are shown as arrows pointing along the bond from the less electronegative atom toward the more electronegative atom. A small plus sign is drawn on the less electronegative end to indicate the partially positive end of the bond. The length of the arrow is proportional to the magnitude of the electronegativity difference between the two atoms.

Figure 13. (a) There is a small difference in electronegativity between C and H, represented as a short vector. (b) The electronegativity difference between B and F is much larger, so the vector representing the bond moment is much longer.

A whole molecule may also have a separation of charge, depending on its molecular structure and the polarity of each of its bonds. If such a charge separation exists, the molecule is said to be a polar molecule (or dipole); otherwise the molecule is said to be nonpolar. The dipole moment measures the extent of net charge separation in the molecule as a whole. We determine the dipole moment by adding the bond moments in three-dimensional space, taking into account the molecular structure.

For diatomic molecules, there is only one bond, so its bond dipole moment determines the molecular polarity. Homonuclear diatomic molecules such as Br2 and N2 have no difference in electronegativity, so their dipole moment is zero. For heteronuclear molecules such as CO, there is a small dipole moment. For HF, there is a larger dipole moment because there is a larger difference in electronegativity.

When a molecule contains more than one bond, the geometry must be taken into account. If the bonds in a molecule are arranged such that their bond moments cancel (vector sum equals zero), then the molecule is nonpolar. This is the situation in CO2 (Figure 14). Each of the bonds is polar, but the molecule as a whole is nonpolar. From the Lewis structure, and using VSEPR theory, we determine that the CO2 molecule is linear with polar C=O bonds on opposite sides of the carbon atom. The bond moments cancel because they are pointed in opposite directions. In the case of the water molecule (Figure 14), the Lewis structure again shows that there are two bonds to a central atom, and the electronegativity difference again shows that each of these bonds has a nonzero bond moment. In this case, however, the molecular structure is bent because of the lone pairs on O, and the two bond moments do not cancel. Therefore, water does have a net dipole moment and is a polar molecule (dipole).

Figure 14. The overall dipole moment of a molecule depends on the individual bond dipole moments and how they are arranged. (a) Each CO bond has a bond dipole moment, but they point in opposite directions so that the net CO2 molecule is nonpolar. (b) In contrast, water is polar because the OH bond moments do not cancel out.

The OCS molecule has a structure similar to CO2, but a sulfur atom has replaced one of the oxygen atoms. To determine if this molecule is polar, we draw the molecular structure. VSEPR theory predicts a linear molecule:

Although the C–O bond is polar, C and S have the same electronegativity values as shown in Figure 15, so there is no C–S dipole. Thus, the two bonds do not have of the same bond dipole moment, and the bond moments do not cancel. Because oxygen is more electronegative than sulfur, the oxygen end of the molecule is the negative end.

Figure 15. The electronegativity values derived by Pauling follow predictable periodic trends with the higher electronegativities toward the upper right of the periodic table.

Chloromethane, CH3Cl, is another example of a polar molecule. Although the polar C–Cl and C–H bonds are arranged in a tetrahedral geometry, the C–Cl bonds have a larger bond moment than the C–H bond, and the bond moments do not completely cancel each other. All of the dipoles have a downward component in the orientation shown, since carbon is more electronegative than hydrogen and less electronegative than chlorine:

When we examine the highly symmetrical molecules BF3 (trigonal planar), CH4 (tetrahedral), PF5 (trigonal bipyramidal), and SF6 (octahedral), in which all the polar bonds are identical, the molecules are nonpolar. The bonds in these molecules are arranged such that their dipoles cancel. However, just because a molecule contains identical bonds does not mean that the dipoles will always cancel. Many molecules that have identical bonds and lone pairs on the central atoms have bond dipoles that do not cancel. Examples include H2S and NH3. A hydrogen atom is at the positive end and a nitrogen or sulfur atom is at the negative end of the polar bonds in these molecules:

To summarize, to be polar, a molecule must:

1. Contain at least one polar covalent bond.
2. Have a molecular structure such that the sum of the vectors of each bond dipole moment does not cancel.

Properties of Polar Molecules

Polar molecules tend to align when placed in an electric field with the positive end of the molecule oriented toward the negative plate and the negative end toward the positive plate (Figure 16). We can use an electrically charged object to attract polar molecules, but nonpolar molecules are not attracted. Also, polar solvents are better at dissolving polar substances, and nonpolar solvents are better at dissolving nonpolar substances.

Figure 16. (a) Molecules are always randomly distributed in the liquid state in the absence of an electric field. (b) When an electric field is applied, polar molecules like HF will align to the dipoles with the field direction.

The PhET molecule polarity simulation provides many ways to explore dipole moments of bonds and molecules.

Example 8: Polarity Simulations

Open the PhET molecule polarity simulation and select the “Three Atoms” tab at the top. This should display a molecule ABC with three electronegativity adjustors. You can display or hide the bond moments, molecular dipoles, and partial charges at the right. Turning on the Electric Field will show whether the molecule moves when exposed to a field, similar to Figure 15.

Use the electronegativity controls to determine how the molecular dipole will look for the starting bent molecule if:

1. A and C are very electronegative and B is in the middle of the range.
2. A is very electronegative, and B and C are not.

Determine the partial charges that will give the largest possible bond dipoles.

Key Concepts and Summary

VSEPR theory predicts the three-dimensional arrangement of atoms in a molecule. It states that valence electrons will assume an electron-pair geometry that minimizes repulsions between areas of high electron density (bonds and/or lone pairs). Molecular structure, which refers only to the placement of atoms in a molecule and not the electrons, is equivalent to electron-pair geometry only when there are no lone electron pairs around the central atom. A dipole moment measures a separation of charge. For one bond, the bond dipole moment is determined by the difference in electronegativity between the two atoms. For a molecule, the overall dipole moment is determined by both the individual bond moments and how these dipoles are arranged in the molecular structure. Polar molecules (those with an appreciable dipole moment) interact with electric fields, whereas nonpolar molecules do not.

Exercises

1. Explain why the HOH molecule is bent, whereas the HBeH molecule is linear.
2. What feature of a Lewis structure can be used to tell if a molecule’s (or ion’s) electron-pair geometry and molecular structure will be identical?
3. Explain the difference between electron-pair geometry and molecular structure.
4. Why is the H–N–H angle in NH3 smaller than the H–C–H bond angle in CH4? Why is the H–N–H angle in ${\text{NH}}_{4}^{+}$ identical to the H–C–H bond angle in CH4?
5. Explain how a molecule that contains polar bonds can be nonpolar.
6. As a general rule, MXn molecules (where M represents a central atom and X represents terminal atoms; n = 2 – 5) are polar if there is one or more lone pairs of electrons on M. NH3 (M = N, X = H, n = 3) is an example. There are two molecular structures with lone pairs that are exceptions to this rule. What are they?
7. Predict the electron pair geometry and the molecular structure of each of the following molecules or ions:
1. SF
2. PCl
3. BeH
4. ${\text{CH}}_{3}^{+}$
8. Identify the electron pair geometry and the molecular structure of each of the following molecules or ions:
1. ${\text{IF}}_{6}^{+}$
2. CF
3. BF
4. ${\text{SiF}}_{5}^{-}$
5. BeCl2
9. What are the electron-pair geometry and the molecular structure of each of the following molecules or ions?
1. ClF
2. ${\text{ClO}}_{2}^{-}$
3. ${\text{TeCl}}_{4}^{2-}$
4. PCl
5. SeF
6. ${\text{PH}}_{2}^{-}$
10. Predict the electron pair geometry and the molecular structure of each of the following ions:
1. H3O
2. ${\text{PCl}}_{4}^{-}$
3. ${\text{SnCl}}_{3}^{-}$
4. ${\text{BrCl}}_{4}^{-}$
5. ICl
6. XeF
7. SF2
11. Identify the electron pair geometry and the molecular structure of each of the following molecules:
1. ClNO (N is the central atom)
2. CS
3. Cl2CO (C is the central atom)
4. Cl2SO (S is the central atom)
5. SO2F2 (S is the central atom)
6. XeO2F2 (Xe is the central atom)
7. ${\text{ClOF}}_{2}^{+}$ (Cl is the central atom)
12. Predict the electron pair geometry and the molecular structure of each of the following:
1. IOF5 (I is the central atom)
2. POCl3 (P is the central atom)
3. Cl2SeO (Se is the central atom)
4. ClSO+ (S is the central atom)
5. F2SO (S is the central atom)
6. ${\text{NO}}_{2}^{-}$
7. ${\text{SiO}}_{4}^{\text{4-}}$
13. Which of the following molecules and ions contain polar bonds? Which of these molecules and ions have dipole moments?
1. ClF
2. ${\text{ClO}}_{2}^{-}$
3. ${\text{TeCl}}_{4}^{2-}$
4. PCl
5. SeF
6. ${\text{PH}}_{2}^{-}$
7. XeF2
14. Which of the molecules and ions in Exercise 9 contain polar bonds? Which of these molecules and ions have dipole moments?
1. H3O
2. ${\text{PCl}}_{4}^{-}$
3. ${\text{SnCl}}_{3}^{-}$
4. ${\text{BrCl}}_{4}^{-}$
5. ICl
6. XeF4
7. SF2
15. Which of the following molecules have dipole moments?
1. CS
2. SeS
3. CCl2F
4. PCl3 (P is the central atom)
5. ClNO (N is the central atom)
16. Identify the molecules with a dipole moment:
1. SF
2. CF
3. Cl2CCBr
4. CH3Cl
5. H2CO
17. The molecule XF3 has a dipole moment. Is X boron or phosphorus?
18. The molecule XCl2 has a dipole moment. Is X beryllium or sulfur?
19. Is the Cl2BBCl2 molecule polar or nonpolar?
20. There are three possible structures for PCl2F3 with phosphorus as the central atom. Draw them and discuss how measurements of dipole moments could help distinguish among them.
21. Describe the molecular structure around the indicated atom or atoms:
1. the sulfur atom in sulfuric acid, H2SO4 [(HO)2SO2]
2. the chlorine atom in chloric acid, HClO3 [HOClO2]
3. the oxygen atom in hydrogen peroxide, HOOH
4. the nitrogen atom in nitric acid, HNO3 [HONO2]
5. the oxygen atom in the OH group in nitric acid, HNO3 [HONO2]
6. the central oxygen atom in the ozone molecule, O
7. each of the carbon atoms in propyne, CH3CCH
8. the carbon atom in Freon, CCl2F
9. each of the carbon atoms in allene, H2CCCH2
22. Draw the Lewis structures and predict the shape of each compound or ion:
1. CO
2. ${\text{NO}}_{2}^{-}$
3. SO
4. ${\text{SO}}_{3}^{2-}$
23. A molecule with the formula AB2, in which A and B represent different atoms, could have one of three different shapes. Sketch and name the three different shapes that this molecule might have. Give an example of a molecule or ion for each shape.
24. A molecule with the formula AB3, in which A and B represent different atoms, could have one of three different shapes. Sketch and name the three different shapes that this molecule might have. Give an example of a molecule or ion that has each shape.
25. Draw the Lewis electron dot structures for these molecules, including resonance structures where appropriate:
1. ${\text{CS}}_{3}^{2-}$
2. CS
3. CS
4. predict the molecular shapes for ${\text{CS}}_{3}^{2-}$ and CS2 and explain how you arrived at your predictions
26. What is the molecular structure of the stable form of FNO2? (N is the central atom.)
27. A compound with a molar mass of about 42 g/mol contains 85.7% carbon and 14.3% hydrogen. What is its molecular structure?
28. Use the PhET simulation to perform the following exercises for a two-atom molecule:
1. Adjust the electronegativity value so the bond dipole is pointing toward B. Then determine what the electronegativity values must be to switch the dipole so that it points toward A.
2. With a partial positive charge on A, turn on the electric field and describe what happens.
3. With a small partial negative charge on A, turn on the electric field and describe what happens.
4. Reset all, and then with a large partial negative charge on A, turn on the electric field and describe what happens.
29. Use the PhET simulation to perform the following exercises for a real molecule. You may need to rotate the molecules in three dimensions to see certain dipoles.
1. Sketch the bond dipoles and molecular dipole (if any) for O3. Explain your observations.
2. Look at the bond dipoles for NH3. Use these dipoles to predict whether N or H is more electronegative.
3. Predict whether there should be a molecular dipole for NH3 and, if so, in which direction it will point. Check the molecular dipole box to test your hypothesis.
30. Use the PhET Molecule Shape simulator to build a molecule. Starting with the central atom, click on the double bond to add one double bond. Then add one single bond and one lone pair. Rotate the molecule to observe the complete geometry. Name the electron group geometry and molecular structure and predict the bond angle. Then click the check boxes at the bottom and right of the simulator to check your answers.
31. Use the PhET Molecule Shape simulator to explore real molecules. On the Real Molecules tab, select H2O. Switch between the “real” and “model” modes. Explain the difference observed.
32. Use the PhET Molecule Shape simulator to explore real molecules. On the Real Molecules tab, select “model” mode and S2O. What is the model bond angle? Explain whether the “real” bond angle should be larger or smaller than the ideal model angle.

Glossary

axial position: location in a trigonal bipyramidal geometry in which there is another atom at a 180° angle and the equatorial positions are at a 90° angle

bond angle: angle between any two covalent bonds that share a common atom

bond distance: (also, bond length) distance between the nuclei of two bonded atoms

bond dipole moment: separation of charge in a bond that depends on the difference in electronegativity and the bond distance represented by partial charges or a vector

dipole moment: property of a molecule that describes the separation of charge determined by the sum of the individual bond moments based on the molecular structure

electron-pair geometry: arrangement around a central atom of all regions of electron density (bonds, lone pairs, or unpaired electrons)

equatorial position: one of the three positions in a trigonal bipyramidal geometry with 120° angles between them; the axial positions are located at a 90° angle

linear: shape in which two outside groups are placed on opposite sides of a central atom

molecular structure: structure that includes only the placement of the atoms in the molecule

octahedral: shape in which six outside groups are placed around a central atom such that a three-dimensional shape is generated with four groups forming a square and the other two forming the apex of two pyramids, one above and one below the square plane

polar molecule: (also, dipole) molecule with an overall dipole moment

tetrahedral: shape in which four outside groups are placed around a central atom such that a three-dimensional shape is generated with four corners and 109.5° angles between each pair and the central atom

trigonal bipyramidal: shape in which five outside groups are placed around a central atom such that three form a flat triangle with 120° angles between each pair and the central atom, and the other two form the apex of two pyramids, one above and one below the triangular plane

trigonal planar: shape in which three outside groups are placed in a flat triangle around a central atom with 120° angles between each pair and the central atom

valence shell electron-pair repulsion theory (VSEPR): theory used to predict the bond angles in a molecule based on positioning regions of high electron density as far apart as possible to minimize electrostatic repulsion

vector: quantity having magnitude and direction