{"id":3713,"date":"2018-07-16T15:10:29","date_gmt":"2018-07-16T15:10:29","guid":{"rendered":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/?post_type=chapter&#038;p=3713"},"modified":"2018-07-30T23:32:59","modified_gmt":"2018-07-30T23:32:59","slug":"1-7-3d-structure","status":"publish","type":"chapter","link":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/chapter\/1-7-3d-structure\/","title":{"raw":"1.7. 3D Structure","rendered":"1.7. 3D Structure"},"content":{"raw":"<h3 class=\"editable\">Dashed-wedged line structure<\/h3>\r\nA widely used way of showing the 3D structure of molecules is based on the skeletal formula, but using of <strong>dashes, wedges, and straight lines<\/strong>. This drawing method is essential because the placement of different atoms could yield different molecules even if the molecular formulas were exactly the same. Below are two drawings of a 4-carbon molecule with two chlorines and two bromines attached.\r\n<table style=\"border-collapse: collapse;width: 100%\" border=\"1\">\r\n<tbody>\r\n<tr>\r\n<td style=\"width: 50%\"><img class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202254\/stick1.jpg\" alt=\"stick1.jpg\" width=\"112\" height=\"82\" \/><\/td>\r\n<td style=\"width: 50%\"><img class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202254\/stick2.jpg\" alt=\"stick2.jpg\" width=\"118\" height=\"86\" \/><\/td>\r\n<\/tr>\r\n<tr>\r\n<td style=\"width: 50%;text-align: center\">4-carbon molecule with 2 chlorines and 2 bromines<\/td>\r\n<td style=\"width: 50%;text-align: center\">4-carbon molecule with 2 chlorines and 2 bromines<\/td>\r\n<\/tr>\r\n<\/tbody>\r\n<\/table>\r\nBoth drawings look like they represent the same molecule; however, if we add dashes and wedged bonds we will see that two different molecules could be depicted:\r\n\r\n<img class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202255\/dashwedge1.jpg\" alt=\"dashwedge1.jpg\" width=\"244\" height=\"82\" \/>\r\n\r\nThe two molecules above are different, prove this to yourself by building a model. An easier way to compare the two molecules is to rotate one of the bonds (here, it is the bond on the right):\r\n\r\n<img class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202257\/dashwedge2_1.jpg\" alt=\"dashwedge2 (1).jpg\" width=\"246\" height=\"74\" \/>\r\n\r\nNotice how the molecule on the right has both bromines on the same side and chlorines on the same side, whereas the first molecule is different. Read about <strong>dashed-wedged Line<\/strong> structures, bottom of page, to understand what has been introduced above. You will learn more about the importance of atomic connectivity in molecules as you continue on to learn about <a title=\"Organic Chemistry\/Organic Chemistry With a Biological Emphasis\/Chapter 3: Conformations and Stereochemistry\/Section 3.9: Stereochemistry and organic reactivity\" href=\"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/part\/4-stereochemistry\/\" rel=\"internal\"><span class=\"external\">stereochemistry<\/span><\/a>.\r\n<div id=\"section_7\" class=\"mt-section\">\r\n<p class=\"editable\">The following are examples of each, and how they can be used together.<\/p>\r\n<img class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202307\/DWL.jpg\" alt=\"DWL.jpg\" width=\"296\" height=\"299\" \/>\r\n\r\n[caption id=\"\" align=\"aligncenter\" width=\"720\"]<a title=\"dashed.jpg\" href=\"https:\/\/chem.libretexts.org\/@api\/deki\/files\/1826\/dashed.jpg?revision=1\" rel=\"internal\"><img class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202309\/dashed.jpg\" alt=\"dashed.jpg\" width=\"720\" height=\"154\" \/><\/a> Blue bead= OH group; White bead=H[\/caption]\r\n\r\nAbove are 4-carbon chains with attached OH groups or Cl and Br atoms. Remember that each line represents a bond and that the carbons and hydrogens have been omitted. When you look at or draw these structures, the straight lines illustrate atoms and bonds that are in the same plane, the plane of the paper (in this case, computer screen). <strong>Dashed lines<\/strong> show atoms and bonds that go into the page, behind the plane, away from you. In the above example, the OH group is going into the plane, while at the same time a hydrogen comes out (wedged).\r\n\r\n<strong>Wedged lines<\/strong> illustrate bonds and atoms that come out of the page, in front of the plane, toward you. In the 2D diagram above, the OH group is coming out of the plane of the paper, while a hydrogen goes in (dashed).\r\n\r\n[caption id=\"\" align=\"aligncenter\" width=\"720\"]<a title=\"Wedged.jpg\" href=\"https:\/\/chem.libretexts.org\/@api\/deki\/files\/1845\/Wedged.jpg?revision=1\" rel=\"internal\"><img class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202311\/Wedged.jpg\" alt=\"Wedged.jpg\" width=\"720\" height=\"148\" \/><\/a> Blue bead= OH group; White bead=H[\/caption]\r\n\r\nAs stated before, straight lines illustrate atoms and bonds that are in the same plane as the paper, but in the 2D example, the straight line bond for OH means that it it unsure or irrelevant whether OH is going away or toward you. It is also assumed that hydrogen is also connected to the same carbon that OH is on.\r\n\r\n[caption id=\"\" align=\"aligncenter\" width=\"705\"]<img class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202314\/line.jpg\" alt=\"line.jpg\" width=\"705\" height=\"160\" \/> Blue bead= OH group; H is not shown[\/caption]\r\n\r\nTry using your model kit to see that the OH group cannot lie in the same plane at the carbon chain (don't forget your hydrogens!). In the final 2Dexample, both dashed and wedged lines are used because the attached atoms are not hydrogens (although dashed and wedged lines <em>can<\/em> be used for hydrogens).The chlorine is coming out the page while bromine is going into the page.\r\n\r\n[caption id=\"\" align=\"aligncenter\" width=\"720\"]<a title=\"CLBR.jpg\" href=\"https:\/\/chem.libretexts.org\/@api\/deki\/files\/1825\/CLBR.jpg?revision=1\" rel=\"internal\"><img class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202316\/CLBR.jpg\" alt=\"CLBR.jpg\" width=\"720\" height=\"144\" \/><\/a> Blue bead=Cl; Red bead=Br[\/caption]\r\n\r\n<\/div>","rendered":"<h3 class=\"editable\">Dashed-wedged line structure<\/h3>\n<p>A widely used way of showing the 3D structure of molecules is based on the skeletal formula, but using of <strong>dashes, wedges, and straight lines<\/strong>. This drawing method is essential because the placement of different atoms could yield different molecules even if the molecular formulas were exactly the same. Below are two drawings of a 4-carbon molecule with two chlorines and two bromines attached.<\/p>\n<table style=\"border-collapse: collapse;width: 100%\">\n<tbody>\n<tr>\n<td style=\"width: 50%\"><img loading=\"lazy\" decoding=\"async\" class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202254\/stick1.jpg\" alt=\"stick1.jpg\" width=\"112\" height=\"82\" \/><\/td>\n<td style=\"width: 50%\"><img loading=\"lazy\" decoding=\"async\" class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202254\/stick2.jpg\" alt=\"stick2.jpg\" width=\"118\" height=\"86\" \/><\/td>\n<\/tr>\n<tr>\n<td style=\"width: 50%;text-align: center\">4-carbon molecule with 2 chlorines and 2 bromines<\/td>\n<td style=\"width: 50%;text-align: center\">4-carbon molecule with 2 chlorines and 2 bromines<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>Both drawings look like they represent the same molecule; however, if we add dashes and wedged bonds we will see that two different molecules could be depicted:<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202255\/dashwedge1.jpg\" alt=\"dashwedge1.jpg\" width=\"244\" height=\"82\" \/><\/p>\n<p>The two molecules above are different, prove this to yourself by building a model. An easier way to compare the two molecules is to rotate one of the bonds (here, it is the bond on the right):<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202257\/dashwedge2_1.jpg\" alt=\"dashwedge2 (1).jpg\" width=\"246\" height=\"74\" \/><\/p>\n<p>Notice how the molecule on the right has both bromines on the same side and chlorines on the same side, whereas the first molecule is different. Read about <strong>dashed-wedged Line<\/strong> structures, bottom of page, to understand what has been introduced above. You will learn more about the importance of atomic connectivity in molecules as you continue on to learn about <a title=\"Organic Chemistry\/Organic Chemistry With a Biological Emphasis\/Chapter 3: Conformations and Stereochemistry\/Section 3.9: Stereochemistry and organic reactivity\" href=\"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/part\/4-stereochemistry\/\" rel=\"internal\"><span class=\"external\">stereochemistry<\/span><\/a>.<\/p>\n<div id=\"section_7\" class=\"mt-section\">\n<p class=\"editable\">The following are examples of each, and how they can be used together.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"internal default aligncenter\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202307\/DWL.jpg\" alt=\"DWL.jpg\" width=\"296\" height=\"299\" \/><\/p>\n<div style=\"width: 730px\" class=\"wp-caption aligncenter\"><a title=\"dashed.jpg\" href=\"https:\/\/chem.libretexts.org\/@api\/deki\/files\/1826\/dashed.jpg?revision=1\" rel=\"internal\"><img loading=\"lazy\" decoding=\"async\" class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202309\/dashed.jpg\" alt=\"dashed.jpg\" width=\"720\" height=\"154\" \/><\/a><\/p>\n<p class=\"wp-caption-text\">Blue bead= OH group; White bead=H<\/p>\n<\/div>\n<p>Above are 4-carbon chains with attached OH groups or Cl and Br atoms. Remember that each line represents a bond and that the carbons and hydrogens have been omitted. When you look at or draw these structures, the straight lines illustrate atoms and bonds that are in the same plane, the plane of the paper (in this case, computer screen). <strong>Dashed lines<\/strong> show atoms and bonds that go into the page, behind the plane, away from you. In the above example, the OH group is going into the plane, while at the same time a hydrogen comes out (wedged).<\/p>\n<p><strong>Wedged lines<\/strong> illustrate bonds and atoms that come out of the page, in front of the plane, toward you. In the 2D diagram above, the OH group is coming out of the plane of the paper, while a hydrogen goes in (dashed).<\/p>\n<div style=\"width: 730px\" class=\"wp-caption aligncenter\"><a title=\"Wedged.jpg\" href=\"https:\/\/chem.libretexts.org\/@api\/deki\/files\/1845\/Wedged.jpg?revision=1\" rel=\"internal\"><img loading=\"lazy\" decoding=\"async\" class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202311\/Wedged.jpg\" alt=\"Wedged.jpg\" width=\"720\" height=\"148\" \/><\/a><\/p>\n<p class=\"wp-caption-text\">Blue bead= OH group; White bead=H<\/p>\n<\/div>\n<p>As stated before, straight lines illustrate atoms and bonds that are in the same plane as the paper, but in the 2D example, the straight line bond for OH means that it it unsure or irrelevant whether OH is going away or toward you. It is also assumed that hydrogen is also connected to the same carbon that OH is on.<\/p>\n<div style=\"width: 715px\" class=\"wp-caption aligncenter\"><img loading=\"lazy\" decoding=\"async\" class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202314\/line.jpg\" alt=\"line.jpg\" width=\"705\" height=\"160\" \/><\/p>\n<p class=\"wp-caption-text\">Blue bead= OH group; H is not shown<\/p>\n<\/div>\n<p>Try using your model kit to see that the OH group cannot lie in the same plane at the carbon chain (don&#8217;t forget your hydrogens!). In the final 2Dexample, both dashed and wedged lines are used because the attached atoms are not hydrogens (although dashed and wedged lines <em>can<\/em> be used for hydrogens).The chlorine is coming out the page while bromine is going into the page.<\/p>\n<div style=\"width: 730px\" class=\"wp-caption aligncenter\"><a title=\"CLBR.jpg\" href=\"https:\/\/chem.libretexts.org\/@api\/deki\/files\/1825\/CLBR.jpg?revision=1\" rel=\"internal\"><img loading=\"lazy\" decoding=\"async\" class=\"internal default\" src=\"https:\/\/s3-us-west-2.amazonaws.com\/courses-images\/wp-content\/uploads\/sites\/3369\/2018\/06\/19202316\/CLBR.jpg\" alt=\"CLBR.jpg\" width=\"720\" height=\"144\" \/><\/a><\/p>\n<p class=\"wp-caption-text\">Blue bead=Cl; Red bead=Br<\/p>\n<\/div>\n<\/div>\n\n\t\t\t <section class=\"citations-section\" role=\"contentinfo\">\n\t\t\t <h3>Candela Citations<\/h3>\n\t\t\t\t\t <div>\n\t\t\t\t\t\t <div id=\"citation-list-3713\">\n\t\t\t\t\t\t\t <div class=\"licensing\"><div class=\"license-attribution-dropdown-subheading\">CC licensed content, Shared previously<\/div><ul class=\"citation-list\"><li><strong>Authored by<\/strong>: Choo, Ezen (2009, UCD &#039;11). <strong>Located at<\/strong>: <a target=\"_blank\" href=\"https:\/\/chem.libretexts.org\/Core\/Organic_Chemistry\/Fundamentals\/Structure_of_Organic_Molecules\">https:\/\/chem.libretexts.org\/Core\/Organic_Chemistry\/Fundamentals\/Structure_of_Organic_Molecules<\/a>. <strong>Project<\/strong>: Chemistry LibreTexts. <strong>License<\/strong>: <em><a target=\"_blank\" rel=\"license\" href=\"https:\/\/creativecommons.org\/licenses\/by-nc-sa\/4.0\/\">CC BY-NC-SA: Attribution-NonCommercial-ShareAlike<\/a><\/em><\/li><\/ul><\/div>\n\t\t\t\t\t\t <\/div>\n\t\t\t\t\t <\/div>\n\t\t\t <\/section>","protected":false},"author":96103,"menu_order":7,"template":"","meta":{"_candela_citation":"[{\"type\":\"cc\",\"description\":\"\",\"author\":\"Choo, Ezen (2009, UCD \\'11)\",\"organization\":\"\",\"url\":\"https:\/\/chem.libretexts.org\/Core\/Organic_Chemistry\/Fundamentals\/Structure_of_Organic_Molecules\",\"project\":\"Chemistry LibreTexts\",\"license\":\"cc-by-nc-sa\",\"license_terms\":\"\"}]","CANDELA_OUTCOMES_GUID":"","pb_show_title":"on","pb_short_title":"3D structure","pb_subtitle":"","pb_authors":["martin-walker"],"pb_section_license":"cc-by-sa"},"chapter-type":[],"contributor":[54],"license":[57],"class_list":["post-3713","chapter","type-chapter","status-publish","hentry","contributor-martin-walker","license-cc-by-sa"],"part":2222,"_links":{"self":[{"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/chapters\/3713","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/chapters"}],"about":[{"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/wp\/v2\/types\/chapter"}],"author":[{"embeddable":true,"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/wp\/v2\/users\/96103"}],"version-history":[{"count":7,"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/chapters\/3713\/revisions"}],"predecessor-version":[{"id":4376,"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/chapters\/3713\/revisions\/4376"}],"part":[{"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/parts\/2222"}],"metadata":[{"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/chapters\/3713\/metadata\/"}],"wp:attachment":[{"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/wp\/v2\/media?parent=3713"}],"wp:term":[{"taxonomy":"chapter-type","embeddable":true,"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/pressbooks\/v2\/chapter-type?post=3713"},{"taxonomy":"contributor","embeddable":true,"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/wp\/v2\/contributor?post=3713"},{"taxonomy":"license","embeddable":true,"href":"https:\/\/courses.lumenlearning.com\/suny-potsdam-organicchemistry\/wp-json\/wp\/v2\/license?post=3713"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}